The warm, inviting scent of cinnamon and nutmeg swirling through the air takes me back to crisp autumn days spent apple picking. With the seasonal harvest in full swing, there’s no better way to celebrate than with these delightful Apple Crumble Cupcakes. Each bite is a cozy escape, thanks to their fluffy, spiced cake filled with tender apples and finished with a buttery crumble topping. Plus, they’re versatile—a perfect crowd-pleaser for holiday gatherings or a sweet afternoon treat, and they can easily cater to gluten-free or vegan diets. Ready to embrace fall with a baking adventure that encapsulates the essence of comfort food? Let’s dig into how to create these irresistible Apple Crumble Cupcakes together!

Why are Apple Crumble Cupcakes so delightful?
Irresistible aroma: The warm scent of cinnamon and nutmeg will fill your kitchen, creating a cozy atmosphere.
Comfort in every bite: These cupcakes are a delightful fusion of soft cake and a crunchy topping, reminiscent of traditional apple crumble.
Customizable for everyone: With options for gluten-free and vegan ingredients, everyone can enjoy this comforting treat!
Simple to make: The straightforward steps make it easy for bakers of all levels to whip up a delicious batch.
Perfect for any occasion: Whether it’s a festive gathering or a personal indulgence, Cinnamon Apple Cottage is just one way to explore more seasonal flavors!
Storage for later: These cupcakes stay fresh for days or can even be frozen, so you can savor them long after your bake day.
Apple Crumble Cupcake Ingredients
For the Cupcakes
• All-purpose flour – Structure for cupcakes; substitute with a gluten-free flour blend for a gluten-free option.
• Light brown sugar – Adds moisture and a rich, caramel flavor perfect for fall.
• Ground cinnamon – Essential for autumn baking, it warms the flavor profile beautifully.
• Ground nutmeg – Complements cinnamon; can be replaced with allspice for a different flavor note.
• Unsalted butter (cold and softened) – Cold butter provides a crispy topping; softened butter ensures a tender cake.
• Apples (Honeycrisp, Gala, or Fuji) – Provide sweetness and moisture; any firm variety works, but tart apples add great contrast.
• Granulated sugar – Sweetens the apple filling for a delightful taste.
• Lemon juice – Enhances flavor and prevents the apples from browning.
• Baking powder & baking soda – Essential leavening for a fluffy cupcake texture.
• Salt – Balances sweetness and enhances overall flavor.
• Eggs – Bind the ingredients while adding moisture to the batter.
• Vanilla extract – Adds depth to the cupcake flavor, making it irresistible.
• Sour cream or plain yogurt – Keeps cupcakes moist; substitute with a plant-based yogurt for a vegan option.
• Milk – Adds moisture; you can opt for any non-dairy milk for vegan variations.
For the Crumble Topping
• Unsalted butter (cold) – Helps form a crumbly texture; keep it cold for the best results.
• Granulated sugar – Sweetens the crumble, enhancing its flavor.
• All-purpose flour – Helps bind the crumble together; can use gluten-free flour here too.
• Ground cinnamon – Adds warmth and flavor that complements the apple filling.
Optional Add-Ons
• Caramel sauce – Drizzle on top for extra sweetness and a touch of decadence.
• Powdered sugar – Dust over cupcakes for a pretty finish and extra sweetness.
Get ready to embrace the comforting flavors of the season with these delightful Apple Crumble Cupcakes, perfect for any occasion!
Step‑by‑Step Instructions for Apple Crumble Cupcakes
Step 1: Prepare the Crumble Topping
Start by combining 1 cup of all-purpose flour, 1/2 cup of granulated sugar, and 1 teaspoon of ground cinnamon in a mixing bowl. Add 1/2 cup of cold cubed unsalted butter, using a pastry cutter or your fingers to blend until the mixture resembles coarse crumbs. Once mixed, refrigerate the crumble topping for about 15 minutes to ensure it stays crisp during baking.
Step 2: Make the Apple Filling
While the crumble is chilling, prepare the apple filling. In a medium bowl, toss 2 cups of diced apples (like Honeycrisp or Fuji) with 1/4 cup of granulated sugar, 1 tablespoon of lemon juice, and a pinch of ground cinnamon. Set this mixture aside for about 10 minutes to allow the flavors to meld, creating a fragrant apple filling for your Apple Crumble Cupcakes.
Step 3: Prepare the Batter
Preheat your oven to 350°F (175°C). In a large mixing bowl, cream together 1/2 cup of softened unsalted butter and 3/4 cup of light brown sugar using an electric mixer until light and fluffy, about 3-4 minutes. Beat in 2 eggs and 1 teaspoon of vanilla extract until well combined. This step creates a rich base for your cupcakes.
Step 4: Mix Dry Ingredients
In a separate bowl, whisk together 1 1/2 cups of all-purpose flour, 1 teaspoon of baking powder, 1/2 teaspoon of baking soda, and 1/4 teaspoon of salt. This mixture brings structure to your Apple Crumble Cupcakes, ensuring they rise beautifully. Gradually incorporate this dry mixture into the wet ingredients, mixing until just combined to avoid overmixing.
Step 5: Combine Mixtures
Now, alternate adding 1/2 cup of sour cream (or plant-based yogurt) and the dry ingredients to the creamed butter mixture. Begin with the dry ingredients, mixing until just combined before adding the sour cream. Repeat this process until everything is fully incorporated. Your batter should be smooth but thick, perfect for holding the apple filling.
Step 6: Assemble the Cupcakes
Line a standard muffin tin with cupcake liners. Spoon about 1 tablespoon of the batter into each liner, followed by a generous tablespoon of the apple filling. Top each cupcake with an additional spoonful of batter and finally, finish with a generous sprinkle of the chilled crumble topping. This layering creates a delightful texture in your Apple Crumble Cupcakes.
Step 7: Bake
Bake the cupcakes in the preheated oven for 20-25 minutes, or until they are golden brown and a toothpick inserted into the center comes out clean. Keep an eye on them during the last few minutes; they should spring back when gently pressed. Once done, remove the cupcakes from the oven and let them cool in the pan for about 5 minutes before transferring to a wire rack.
Step 8: Garnish (Optional)
For a special touch, drizzle your cooled Apple Crumble Cupcakes with caramel sauce or dust them lightly with powdered sugar. This optional step adds a beautiful finish to your baked treat, making them even more enticing for your fall gatherings or cozy afternoons. Now, enjoy your delicious Apple Crumble Cupcakes!

How to Store and Freeze Apple Crumble Cupcakes
Room Temperature: Store cooled cupcakes in an airtight container at room temperature for up to 3 days to maintain their freshness.
Fridge: If you prefer, refrigerate the cupcakes in an airtight container for up to 5 days. This can help prolong their freshness.
Freezer: For longer storage, freeze the cupcakes individually wrapped in plastic wrap and placed in a freezer-safe bag for up to 3 months. Thaw at room temperature before enjoying.
Reheating: To warm a cupcake, place it in the microwave for about 10-15 seconds. This will help revive the moist texture of your Apple Crumble Cupcakes.
Expert Tips for Apple Crumble Cupcakes
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Use Cold Butter: Ensure the butter for the crumble topping is cold; this helps achieve that delightful crispy texture that complements the cupcakes.
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Avoid Overmixing: When combining the batter, mix until just combined to prevent dense cupcakes. A light touch keeps them fluffy!
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Cool Before Garnishing: Let the cupcakes cool completely before adding any drizzles or powdered sugar. This ensures beautiful presentation and prevents melting.
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Beat Eggs Properly: Whisk eggs until they are pale to achieve a light and airy cupcake batter. This can make a significant difference in texture.
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Pick the Right Apples: Choose a mix of sweet and tart apples, like Honeycrisp and Granny Smith, for a balanced flavor in your Apple Crumble Cupcakes.
What to Serve with Apple Crumble Cupcakes
Indulging in warm Apple Crumble Cupcakes sets the stage for a delightful fall feast, inspiring comforting pairings that embrace the season.
- Vanilla Ice Cream: A scoop of creamy vanilla ice cream brings a cool contrast to the warm cupcakes, enhancing every spiced bite.
- Whipped Cream: Light and fluffy, whipped cream adds a luscious, airy finish that melds beautifully with the cupcake’s richness.
- Caramel Sauce: Drizzling warm caramel sauce over the top intensifies the sweetness and adds an indulgent touch to this cozy dessert.
- Hot Apple Cider: Sipping on spiced hot apple cider creates a perfect harmony, echoing the cupcake’s apple flavors and autumn spices.
- Coffee or Espresso: A cup of rich coffee or a bold espresso complements the sweet notes, balancing flavors for a satisfying experience.
- Chai Latte: The warm spices of a chai latte offer an aromatic pairing that enhances the cupcake’s cinnamon and nutmeg notes.
- Pumpkin Soup: The velvety smoothness of pumpkin soup creates a savory counterpart, creating a delightful balance to the sweet cupcakes.
- Spiced Nuts: Offer a crunchy side of spiced nuts for an unexpected texture and flavor contrast that invigorates your palate.
- Fruit Salad: A fresh fruit salad with citrus notes brightens the dessert table, enticing with its refreshing taste and vibrant colors.
- Chocolate Drizzle: Adding a touch of dark chocolate drizzle provides a rich complexity, harmonizing with the apple flavors in each cupcake.
Make Ahead Options
These Apple Crumble Cupcakes are perfect for meal prep enthusiasts! You can prepare the crumble topping and apple filling up to 24 hours in advance—just keep them stored separately in the refrigerator. To maintain quality, ensure the crumble topping remains well-covered to avoid moisture buildup. You can also mix the cupcake batter a few hours ahead, refrigerating it until you’re ready to bake. When ready to serve, simply assemble the cupcakes by filling the liners with the batter and layering in the apple filling and crumble before baking. This way, you’ll have warm, delightful Apple Crumble Cupcakes ready with minimal effort on busy weeknights!
Apple Crumble Cupcakes Customization
Don’t be shy about making these lovely cupcakes your own; the possibilities are endless!
- Gluten-Free: Use a gluten-free flour blend instead of all-purpose flour for a safe, delicious option.
- Vegan: Substitute eggs with flaxseed meal or applesauce and use non-dairy milk and yogurt for a plant-based treat.
- Nuts Added: Fold in chopped walnuts or pecans for a nice crunch and additional flavor. They meld beautifully with the apple filling!
- Spice it Up: Try adding ground ginger or cloves to enrich the flavor profile and give a warm kick for that cozy autumn feel.
- Creamy Frosting: Swap out the crumble topping for a thick cream cheese frosting for a rich twist. It’ll be indulgent and delicious!
- Sweet Apple Variety: Experiment with different types of apples. A mix of tart Granny Smith and sweet Honeycrisp can create a delightful balance that elevates these cupcakes.
- Decadent Drizzle: Consider adding a luscious caramel sauce drizzle for an extra sweet treat. It pairs beautifully with the apples and spice!
- Cinnamon Roll Twist: For a fun twist, incorporate cinnamon roll filling inside for a gooey surprise that adds another layer of comfort.
As you bake these Apple Crumble Cupcakes, you might also want to check out other seasonal delights like Caramel Apple Crumble or Baked Apple Cinnamon for more inspiration. Remember, the kitchen is your playground—enjoy the creative process!

Apple Crumble Cupcakes Recipe FAQs
How do I select the right apples for the filling?
Absolutely! Choose firm varieties like Honeycrisp, Gala, or Fuji for sweetness and moisture. For a lovely contrast, tart apples like Granny Smith work wonderfully, adding a delightful balance to the sweetness of the cupcakes.
How should I store my Apple Crumble Cupcakes?
For optimum freshness, store the cooled cupcakes in an airtight container at room temperature for up to 3 days. If you want to keep them longer, they can be refrigerated for up to 5 days, which helps preserve their moistness and flavor.
Can I freeze Apple Crumble Cupcakes?
Yes, indeed! To freeze these cupcakes, wrap them individually in plastic wrap and place them in a freezer-safe bag. They can be frozen for up to 3 months. To enjoy, simply thaw at room temperature. This way, you can savor a comforting treat even on busy days!
What if my cupcake batter seems too dense?
Very understandable! An overmixed batter can lead to dense cupcakes. To avoid this, mix the wet and dry ingredients just until combined. Remember, the goal is a thick, smooth batter without lumps. Also, make sure your butter is at the right temperature and your eggs are well-beaten until pale for the fluffiest results.
Can these cupcakes be made gluten-free or vegan?
Absolutely! For a gluten-free version, substitute all-purpose flour with a gluten-free blend. To make them vegan, use plant-based yogurt instead of sour cream, and swap eggs with flax eggs (1 tablespoon of flaxseed meal mixed with 2.5 tablespoons of water for each egg). This way, everyone can enjoy the warm comfort of these Apple Crumble Cupcakes!
How do I know when my cupcakes are done baking?
You can quickly check for doneness by inserting a toothpick into the center of a cupcake. If it comes out clean or with just a few crumbs, they are ready! The cupcakes should also be golden brown and spring back slightly when touched. Enjoy baking!

Cozy Apple Crumble Cupcakes for the Perfect Autumn Treat
Ingredients
Equipment
Method
- Combine 1 cup of all-purpose flour, 1/2 cup of granulated sugar, and 1 teaspoon of ground cinnamon in a mixing bowl. Add 1/2 cup of cold cubed unsalted butter, blending until crumbs form. Refrigerate for 15 minutes.
- In a medium bowl, toss 2 cups of diced apples with 1/4 cup of granulated sugar, 1 tablespoon of lemon juice, and a pinch of ground cinnamon. Set aside for 10 minutes.
- Preheat oven to 350°F (175°C). Cream together 1/2 cup of softened unsalted butter and 3/4 cup of light brown sugar until fluffy, about 3-4 minutes. Beat in 2 eggs and 1 teaspoon of vanilla until combined.
- Whisk together 1.5 cups of all-purpose flour, 1 teaspoon of baking powder, 1/2 teaspoon of baking soda, and 1/4 teaspoon of salt in a separate bowl. Gradually mix into wet ingredients until just combined.
- Alternate adding 1/2 cup of sour cream and the dry mixture to the creamed butter, mixing until just combined. The batter should be smooth but thick.
- Line a muffin tin with cupcake liners. Spoon 1 tablespoon of batter into each liner, add apple filling, then top with more batter and crumble topping.
- Bake for 20-25 minutes, until golden brown and a toothpick comes out clean. Cool in the pan for 5 minutes, then transfer to a wire rack.
- Optional: Drizzle with caramel sauce or dust with powdered sugar before serving.

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